Package: GiANT 1.3.4

GiANT: Gene Set Uncertainty in Enrichment Analysis

Toolbox for various enrichment analysis methods and quantification of uncertainty of gene sets, Schmid et al. (2016) <doi:10.1093/bioinformatics/btw030>.

Authors:Florian Schmid [aut], Christoph Muessel [aut], Johann M. Kraus [aut], Hans A. Kestler [aut], Hans A. Kestler [cre]

GiANT_1.3.4.tar.gz
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GiANT.pdf |GiANT.html✨
GiANT/json (API)

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43 exports 0.09 score 0 dependencies 3 scripts 51 downloads

Last updated 12 days agofrom:aaed8ec41a. Checks:OK: 7. Indexed: yes.

Exports:analysis.averageCorrelationanalysis.averageTStatisticanalysis.customOverrepresentationanalysis.globalAncovaanalysis.globalTestanalysis.gseaanalysis.overrepresentationcreateSummaryTableevaluateGeneSetUncertaintyfilterGeneSetsgeneSetAnalysisglobal.ancovaglobal.overrepresentationglobal.testgls.corgls.foldChangegls.moderateTStatisticgls.nBinomTestgls.regressiongls.tStatisticgsAnalysisgss.enrichmentScoregss.fisherExactTestgss.gszgss.maxmeangss.meangss.mediangss.sumgss.wilcoxonRankTestmergeProbesForGenesparseGmtplotOverrepresentationpreprocessGssignificance.permutationsignificance.restandardizationsignificance.samplingtransformation.abstransformation.adjusttransformation.adjustAndBinarizetransformation.binarizetransformation.localFdrtransformation.ranktransformation.square

Dependencies: