BoolNet - Construction, Simulation and Analysis of Boolean Networks

Functions to reconstruct, generate, and simulate synchronous, asynchronous, probabilistic, and temporal Boolean networks. Provides also functions to analyze and visualize attractors in Boolean networks <doi:10.1093/bioinformatics/btq124>.

Last updated 1 years ago

5.80 score 3 stars 6 packages 118 scripts 837 downloads

TunePareto - Multi-Objective Parameter Tuning for Classifiers

Generic methods for parameter tuning of classification algorithms using multiple scoring functions (Muessel et al. (2012), <doi:10.18637/jss.v046.i05>).

Last updated 1 years ago

3.52 score 1 stars 2 packages 93 scripts 362 downloads

ORION - Ordinal Relations

Functions to handle ordinal relations reflected within the feature space. Those function allow to search for ordinal relations in multi-class datasets. One can check whether proposed relations are reflected in a specific feature representation. Furthermore, it provides functions to filter, organize and further analyze those ordinal relations.

Last updated 3 years ago

3.20 score 16 scripts 199 downloads

BiTrinA - Binarization and Trinarization of One-Dimensional Data

Provides methods for the binarization and trinarization of one-dimensional data and some visualization functions.

Last updated 1 years ago

2.52 score 33 scripts 261 downloads

Binarize - Binarization of One-Dimensional Data

Provides methods for the binarization of one-dimensional data and some visualization functions.

Last updated 2 years ago

2.48 score 1 stars 9 scripts 255 downloads

GiANT - Gene Set Uncertainty in Enrichment Analysis

Toolbox for various enrichment analysis methods and quantification of uncertainty of gene sets, Schmid et al. (2016) <doi:10.1093/bioinformatics/btw030>.

Last updated 3 months ago

2.00 score 3 scripts 198 downloads

MOCCA - Multi-Objective Optimization for Collecting Cluster Alternatives

Provides methods to analyze cluster alternatives based on multi-objective optimization of cluster validation indices. For details see Kraus et al. (2011) <doi:10.1007/s00180-011-0244-6>.

Last updated 5 years ago

1.85 score 6 scripts 186 downloads